The best thing that I can think of is to move all the diagrams created to a different package structure to isolate them from the actual classes they have modelled with. Then export that package to XMI.
There's a bit of work here, but do a search-and-replace of the guid of the classes used in the individual model with the guids in the shared model. You can find the guids by selecting the class and showing the project information in the Properties window. The guid will be a modified form of that in the form EAID_XXXXXXX_XXXX_XXXX_XXXX_XXXXXXXX or EAPK_XXXXXXX_XXXX_XXXX_XXXX_XXXXXXXX. There's quite a bit of work doing this, but if each person made enough sequence diagrams then it should be worth it.
Finally, import the resulting XMI into your model and move the diagrams into the required packages, checking that everything worked as you go.